GSD color genetics, aka, complex genetics 101

RiverOtter

Crowing
12 Years
Nov 4, 2009
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Since this is apparently a point of huge interest and more than a little confusion, let’s shine some light.
Generally, people think of genetics like mixing paint. A little of mom, a little of dad, stir it up and baby comes out a mix. Then, in basic biology we learn about Mendel, and Punnet squares, which teach us that genetics is like flipping a coin. A Dominant coin has two Heads, a Recessive has 2 tails and Incomplete Dominant or a Recessive Carrier has a Head and a tail.
So, if Mom flips Ht and Dad flips Ht, their 4 kids are HH, Ht, Ht and tt.

It is easy to learn this lesson and think that’s all there is to it. This is further reinforced by the fact that sometimes, when we are looking at a single, obvious trait, it is. See; blue chickens. But if you want to understand, say, blue-gold duckwing chickens with pearl eyes and yellow legs, well, that starts to seem like a whole handful of coins. It’s worse even than that, so to simplify it as much as possible, let’s define some terms. We’ll be dealing with both color and pattern.

This is a black and TAN dog. Now, in some breeds use the phrase “black and tan” to describe a pattern, but not Shepherds, so to get that thought right out of our heads we’re going to call them “yellow factor dogs”
tan.jpg

This is a black and RED dog. We will call it a “red factor dog” This dog (astonishingly, to some) is genetically different from a yellow factor dog.
Red.jpg
Come on Otter, you’re just being pedantic.
Well, let’s find out. Let’s ask some experts. This image is from the AKC. They seem to think I’m not being pedantic enough, and that the difference between black and; red, tan, cream and silver are ALL important enough to differentiate.
Registration.png

Who would possibly know that??
Well, literally everyone who has ever filled out registration papers for a GSD.

It’s one of the fields you have to fill in. And a person kinda hopes that they wouldn’t guess or lie, but would actually know the difference. So if a person was talking about yellow factor dogs and someone told them they were wrong because of red factor dogs, that someone has either not been paying attention or is purposefully trying to misdirect.

I prefer to believe in Hanlon’s Razor, so let’s assume the former.

Dominance of red, tan, cream and silver go roughly (key word) in that order. Silver dogs may or may not have a gray factor, and they’re past 101, so we’re going to drop them and concentrate on red and yellow factors.
The patterns we will talk about are saddle, blanket and bi-color. A saddle goes like this.
saddle.jpg
Yeah, that’s a horse, and it’s also EXACTLY what the pattern was named for. Black that goes over the back like a saddle and stops before the hips.

This is a blanket. A blanket covers more of the body than a saddle, and goes over the hips.
blanket.jpg
There was some confusion of just what a bi-color dog is. A bi-color can certainly be a black dog with ANY color on it, even just a few freckles on the feet, because if it has any color at all, then it is genetically not black (which is recessive in GSDs). But, to see the standard definition of a bi-color, let’s look at some dogs from a breed that we KNOW are bis, because the entire breed is ONLY bis
That is the sweetest vid. Anyway; Lookit all that red! (it can also be tan, etc) See how it is on the dog’s face, chest, armpits, underside, inner thigh, back of thigh, under the tail? The color can actually come up high enough that, especially on a longer coated dog that already a different undercoat color to confuse the visual even more, it can be hard to visually tell the difference between a highly colored Bi and an extended black blanket.

So, where’s the line? When does a red become a tan become a cream, or a saddle become a blanket?
And that, my loves, is why it is complex genetics.
Because that is a shifting line. To break it into the absolutely simplest (and therefor not the most totally 100% accurate, which would need a LOT more typing than I’m willing to do) beginner lesson, we are going say Yellow factor dogs include tan and cream, what makes the difference is modifiers. Red factor dogs have a different base coat, so modifiers work differently, like drawing with the same markers on different colored paper.

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You keep saying modifiers. What are modifiers?
That is the kicker, because GSDs have LOTS of them. To simplify it as much as possible (and again, this means there’s a lot more to say here, we’re going for “good basic knowledge”), we are going to say there are modifiers that control depth of color. Modifiers can take yellow factor dogs from the rich tan color pictured, to nearly white, to a ruddy color that might be red. Modifiers can take red factor dogs from that deep chestnut pictured to a warm goldeny orange that might look tan.

We are going to say that there are modifiers that extend color. These extenders define just how far down color reaches before it starts that wolf-like countershading. These modifiers are part of what make the difference between a saddle and a blanket GSD.
And then there are fading modifiers. These take black away. Again, wolf-like, most German shepherds are born little dark sausages and lighten into their adult color. (Most, please note, is not all. Some Sables are born light and get darker – the reverse of what we’re discussing. Some are born dark, fade light, and darken back up. This is not yet fully understood, and why Sables are not 101) These modifiers are also part of what differentiates a saddle and a blanket.

Now, to make this even more fun. They can be recessive or dominant or partial or incomplete or ANY of it. Some of these modifiers work with each other, some work against each other, some ignore each other, some cover up each other. We call this stacking. Sometimes, when genes stack, you can’t tell that they’re both there. But sometimes, they have an EXTREME effect on each other.

To show this, we are going to leave off the complex, which is looking more like loaded dice and go back to flipping coins. For a visual, we are going to use another species which is well studied and that – more importantly - I don’t have to hunt for pictures of. (all of these are public sale pics from morphmarket)
This is a Normal ball python. The base model for color and pattern, everything is a variant of that.
normal.jpeg
This is a Mojave
mojave.jpeg
Otter, that’s the same snake.
Sure is close. What we’re looking at is a subtle variation in pattern, a darkening of the head and some slight “blushing” on the sides. It took me 6 months to be able to spot it.
This modifier is a nice, simple, Incomplete Dominant. What an Incomplete Dominant is, if they have one copy of the gene, they’ll show it. So what do two copies of that gene look like?
supermojave.jpeg
What?? There is no way! How does that even happen?
Hey, just because one copy of a gene has a small effect, doesn’t mean that two copies doesn’t have a BIG one! Now, people who like snakes generally like white snakes, but if this was dogs and you held the (historically, with GSDs, Nazi) belief that light colors are a weak or poorly bred animal, that would be a nasty surprise.

Ok, ok, but how is 2 copies different from stacking?
I’m getting there. Groundwork. Ok, so, suppose that you like that pattern variation, and you want it. And you’d like a variation in color, just not like THAT, so you look for a slightly different color.
This is a Lessor, or Butter.
butter.jpeg
Now, even if you don’t like snakes, those sure are some really pretty yellow- browns, and that pattern variation would make them pop even more, so let’s breed those 2.
This is a Butter Mojave
Buttermojave.jpeg
Ok, now you’re just messing with me. What the heck.

Hey, I told you it was complex! Even though those 2 genes have visually totally different effects, they are, in fact part of the same genetic complex. If any animal has any two of these genes (from, not just Mojave and Butter but FIVE visually different, named genes) you get a white snake. Depending on which 2, the white will vary, but any stacking in that complex has an extreme effect. (To learn more about ball pythons, this is the “Blue-eyed lucy complex” and if you google that you will find a wealth of information.

Which brings us back to dogs
Because GSDs have different base coats and those allow modifiers to express differently and modifiers can range from so subtle they need a trained eye and a proper background to be seen, to an extreme color difference all by it’s lonesome and their interactions will vary from can’t been seen if there’s another modifier at play, all the way to, will play with another modifier like 2 drunk teens at a party, it’s a lot less like flipping coins and has turned all the way into playing yahtzee with extra dice and one of them is 10 sided, and all the dice are also numbered, so if dice four and six are 2s, the second 2 only counts if the first die rolled higher than a 4 and if you get snake eyes you’re screwed unless all the odd numbered dice roll 3 or more. Also, we know some of the rules but not all of them.

So, how do you win the game/get the visual effect you want? You load the dice. There are several ways to do that. You can work with red dogs, not all modifiers show on red, so it’s like having 6 dice and taking away 2, you can still screw this up, but at least you’ll never roll five 5s/get a dog as pale as mine (who is, very, very basically, black and cream with lost black)

But maybe you LIKE yellow factor dogs. Why not? They’re beautiful and photogenic, just ask Hollywood, Strongheart to Jerry Lee. There may be a red dog with that pretty black star on their forehead like Roy Roger’s Bullet, but it can’t be as handsome in my eyes. Maybe you like seeing all the subtle differences. How do you get them to not stack the genes till they fade out?
JerryLee.jpg bullet.jpg

Well, all the studying that is ongoing and all the new tests we’re developing will surely help, but in the meantime, the easiest way is to kind of wipe the slate a bit, by every other generation bringing in a dog that DOESN'T have all that going on, aka, a sable or a bicolor, both of which can be that same silver-to-red range we first talked about. So you breed a tan sable to a tan saddle and you’ll get tan blankets. There’s an awful lot still going on under those blankets, to be sure, but visually we have what we’re looking for.

What about that shifting line we talked about earlier. How do you KNOW if a dog is a ruddy tan or a faded red? Or whether it’s a really colored bi or a really extreme blanket?
Tomorrow, genetic testing, yesterday, test breeding, today, a bit of both. So, we know that a red can throw a tan, but a tan can’t throw a red. We know that a bi can throw a blanket, but to get saddle you need multiple copies of that gene.
So, you could breed either of those dogs to a black and cream with a saddle. We KNOW that the cream is a yellow factor, so if there’s any red, that pup had to have a red factor parent, not yellow factor, even dark/ruddy tan, because the modifiers that turned tan into cream in the first place will lighten the darkest tan at least a shade, but can’t touch the red tones the same. We KNOW that a saddle has pretty much all the modifiers to shrink that blanket right up, so if you get even one pup that looks like a bi, that parent was a bi, because that extreme blanket would have been hit with enough modifiers to shrink it to where you’re at least sure.

What’s more, sable and blanketed GSDs colors will change, often dramatically, for roughly 3 years. Do you know what it costs to get a championship on a dog? Most people want to make at least a bit of that money back with pups, so, if you have a dog that’s not quite 2 and aren’t sure if you’re going to pay the professional handler to fly him across the country to get to that really good 3 point show in 6 months, maybe you’ll want to know first how realistically you could stand him at stud? Again, genetic testing – if it is available, or test mating; if those puppies are showing signs of brightness at 5 weeks, maybe you’ll decide to take all that $$$ and invest it in another dog’s career, maybe you’ll only stand him to sable bitches, maybe you’ll decide the dogs who rolled the dice the way the judges like are valuable enough that it’s worth it, or not. But at least you’d know.

And the more we learn, the more we know and the better decisions we can make. So, read some links and never stop learning! https://vgl.ucdavis.edu/test/agouti-dog

This class has been brought to you by rain and insomnia. There will not be a 102. If anyone has legitimate questions, I’m probably not going to have typing time until Monday at the earliest but I’ll try to answer them, or at least tell you where you can find the answers. If anyone has any straw man arguments or hate, trying to drag people down doesn’t build you up. If I don’t answer your questions, it’s because I blocked you. Try getting a hobby.

:love🥰Little dark sausages🥰😍
Puppies.jpg
 

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