I have 10 RIRs and a 64 sq ft run that is about 6'5" made from pallets and plywood with wood chips from a chipper (at work) as bedding. I rotate I have two waters and a feeder. I leave a heat lamp on all the time in the winter and I have a regular light that is on timer and will come on early...
From what I have done and seen, hold a blanket in front of you and slowly walk to the trap and lay the blanket over the trap. It keeps the skunk calm and if it is spooked it will spray the blanket and not you. Grab the handle and carry the trap wherever it is needed to let it loose. Here in Ohio...