Could the cloudy pupil be a sign of cataracts or exposure to avian encephalomyelitis? How is the coop ventilation? Is there any ammonia odor? I am no authority on Mareks disease, but the pictures seen in some of the links look much different that these. The iris color fades to gray and the iris changes to make the pupil appear smaller and irregular.
@microchick , did your chickens have this same appearance to their eyes before progressing to the gray eye/irregular small pupils? Or did they have the ocular form? Thanks.