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I am sorry that you lost him. I have learned a lot about my chickens when I do a necropsy after one dies. The state vet is the place place to get one, since they take tissue samples for testing as well as looking at the organs. But I understand if you would rather bury him?

Green poop can be from not eating enough, and bile. If you can bring him inside where it it warm, you could soak his bottom in warm soapy water, giving it a wash and rinse. Then blow him dry after towel drying. If he has extra fluff, you can trim some to keep it cleaner. You might try stopping...

I would try to clean up his vent in the morning. You may have been seeing his choanal slit in the roof of his beak. Was there any mucus or other material inside the beak? What has he been fed? Has he been wormed recently? Have you added any new birds recently? Does he have any bubbles/foam in...