I agree with almost all of what you are saying here. Birds, chickens included, have a much stronger stomach acid than humans do, and they are able to more completely break down proteins as a result. That's what our stomach acid is mostly for--proteins. We have enzymes in our saliva for starches/carbohydrates, and we have bile from the liver for the fats. We don't typically eat rocks for our minerals (I get a few in my rice), but chickens' stomach acid is of such a level as to partially or even fully digest the rocks they eat, which also function in their gizzard as teeth to help crush their food.) I still don't want to use Soy, because I heard soy contains phytoestrogens which are said to cause _____ by acting like human estrogen.
That bit about gluten was interesting and new information to me. Thank you.
All that said, I wanted to comment on the phytoestrogens being similar to human estrogen. I believe there is an effect here which impacts humans (not necessarily chickens). I live in Asia where soy is one of the staple foods, being consumed as soymilk, tofu, soy sprouts, soybean curd, soy sauce, fermented soy paste, etc. Whereas in America where meat is heavily consumed and men are aggressive and masculine and even women seem to want to be men, in Asia, the opposite trend is observable: men are more effeminate, weaker, and few can grow a full beard--and the men often want to be women (e.g. ladyboys). It appears that there is a strong correlation between diet and the hormonal system (endocrine system). It would be interesting to see the results of a double-blind study in which an experimental group of Caucasians were fed an Asian diet and vice versa, to counter genetic differences, and see if the results would be quantifiably significant.
Back to the chicken feed proteins: I think you meant to be saying "lysine" was higher in soy instead of "methionine". It's my understanding that methionine has to be added to soy proteins (supplemented) in order to make them more digestible, because soy is naturally low in methionine [LINK TO NATURE ARTICLE]. I've noticed, however, that some articles online seem to say soy is high in methionine while others say it is low. I'm wondering if this is in the domain of a popular error that has yet to be dispelled.