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Thanks, guess all I can do is give it another go! Also sorry I should have explained better; they had 3-4 weeks worth of ivermectin drops once a week, is it safe to do another course now 2 months later? How often should I be doing the 3-4 weeks?Amoxicillin works by inhibiting the synthesis of the cell wall in bacteria, essentially destroying the wall, since MG has no cell wall, then Amoxicillin is usually not the best choice for Mycoplasma. But your vet may have a different reason for prescribing and suggesting what they gave you, so it's best that you re-consult them about the meds.
Ivermectin needs to be repeated in 10-14 days, so if you didn't do a follow up this may be why you're having trouble. Mites also do live in the coop, so if they have not been irradicated from housing, then there's another problem. Treating both lice and mites can prove to be difficult, mites can have a life cycle of every 5-7 days depending on the species, so repeating treatment in intervals to kill off those that hatch and break the lifecycle. It may take months.