It's definitely a good thing to separate your sick birds. It may be too late as far as exposure goes at this point, but I'd still separate them. I'd also still try to get an email sent off with the pictures you posted here. It's much easier when you have visual aids, in my opinion.
I hope you...
If I were you, I'd see if you can email them a picture. There's much more going on here than eye bubbles, in my opinion. If you can't email the extension office, I'd email the state lab. I'm sure they'd be happy to help you.
Here's a link with pics that might help. Picture #10 has the most severe picture.
http://partnersah.vet.cornell.edu/avian-atlas/
In the search box of that link, put in Avian Pox. It wouldn't link directly to that page. I think you're dealing with a really bad case of fowl pox.
Oh gosh, poor girls! I wonder if it's a really severe case of fowl pox? I'll look around on the net to see what I can find that compares, but hopefully in the meantime someone will jump in here that might have a better opinion.