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Centers for Disease Control recommends always washing hands after handling poultry. They also recommend the same thing after handling dogs and cats. Do as you will. I don't always follow the rules on washing but it's well known that the best way to ward off illness is to wash hands well and often.

The back damage looks like being overridden by a rooster. The diarrhea could be worms, bacteria, or another stressor. Since no rooster, look them over closely for lice or mites.

I think it's 2 different things. Do you have a rooster?