A lot of people, when relatively new to incubating, are very certain that their incubation methods are ideal because their instruments tell them that their humidity and temperature are correct. However, you have to always realize that most digital thermometers and hygrometers are quite, sometimes very, inaccurate. Also, from what I've experienced, high humidity throughout incubation for waterfowl is a myth and a falsity. There's no logical reason they require humidity anywhere over 50%. However, it is something a lot of people believe when new to incubation and it's widely circulated so there's no reason to be ashamed or guilty. However, when I incubated duck and goose eggs with high humidity, many of the ducks and some of the geese drowned prior to pipping. Also, some of the hygrometers I've used in the past have been off as much as 40%. Thermometers have been awful to me as well. They seem to also get worse over time, and having a bunch doesn't fix anything because they can all disagree with each other. I find that expensive thermometers with probes or medical thermometers are the only ones that give accurate readings for me. The best idea is to have your tools calibrated, especially your hygrometer and your thermometers if they are cheap/do not agree with each other, and make sure your readings were spot on. However, if you had a duckling hatch early and weak, sounds like your temperature might be too high; if some have small air cells, your humidity is too high. That can create a great deal of problems and it seems as if your instruments are not giving you accurate readings.
I would do a google search for "calibrating thermometers" and "calibrating hygrometers" and try out the methods. I know with hygrometers you're supposed to put a certain amount of water with a certain amount of salt in a cup, put the cup with the salt/water mixture in a zip lock bag with the hygrometer and check in eight hours for a specific reading, but you'll need to look up calibration for proper measurements... Also, you can check thermometers by making an ice water and checking with that, but if your thermometers don't have probes they won't be water resistant... In which case, go out and buy a good thermometer. You can find digital thermometers with probes at most pet stores.