I find a few green poos on the bottom of my incubator after chicks hatch, so I wouldn't really worry about that. It should absorb, I would try to keep it moist so it doesn't dry up. It doesn't look too bad. Hopefully it'll be fine.
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Finding an accurate thermometer is the hardest part of incubating, and dilluted bleach removes any smell after incubation. I'll probably be cleaning mine tomorrow, most of the hatch is over... I think. All but 3 eggs hatched in the 9200, and I probably still got 15 eggs or so in the 9300 with no pips. Sadly, The chick fully absorbed his yolk but was dead when I got home; along with a malpositioned pip. The malpositioned pip I was able to help made it! I'll post brooder pics tomorrow, and let you'all know if any hatch tonight... I don't expect any to though.
I would much rather have them die during hatch than have to cull. (I'd rather not loose any, but....) I don't think I am capable of intentionally killing a chick. Thankfully I have not had a dire case yet, and hope I won't, but if and when it comes, I'll have to get outside help. I was the kid that tried to save every hurt/suffering animaI I came across and then cried for hours when they didn't make it. I toughened up in my old age, but not to the point I can do that.Well at least you tried to save the little one. I think that's going to be the most difficult part for me. If they die during hatch or having to cull because of a problem.