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Bleach if fine if used carefully......lots of ventilation and let it dry and air out before putting animals back in there. First @Sarah99 I would ask why do you need to 'clean'? Did you have diseased birds? I hope you don't need to do it now, winter where you are not a good time to be cleaning.

It can also become inert before it kills all the 'bugs'....the more organic material, the quicker it becomes inert. I would just set a fan up to blow fumes away from birds and to dry it as quickly as possible.