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I agree with Azygous. Can you look over the whole body, and look for any smaller lesions that look like a small crater or scabbed area? Squamous cell cancer is common, and they‘re can be others nearby or metastasis. Abscessed wounds and ingrown feather cysts are other common causes of scabby...

Welcome to BYC. How old is the rooster? Is the lesion near his preen gland or some other place?