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When you know you need to mess with the incubator, wash your hands first to remove the bacteria on your hands. Doing it in reverse will add more bacteria to the incubator.

Bacteria starts on outside of the shell and infiltrate inside. If you haven't sanitized your hands while messing with incubator chances are probable for contamination. If that's the case, put some hydrogen peroxide in a spray bottle and fine mist the inside of the incubator. Two shot of mist is...

Just monitor the readings, should be fine. Don't add fake eggs or anything else in the incubator. You run the risk of adding bacteria in it.