First, because you had an active case in with the ones you haven't lost (and hopefully never will) you can assume they were all exposed. Marek's spreads easily and is probably in many more flocks than people will ever know without showing itself as often as we'd assume it would.
You can use a disinfectant to clean, but be forewarned - few will touch Marek's virus (which is Herpesvirus, avian). Virkon-S will - it's listed specifically on the effectiveness list. Bleach won't, Oxine won't, listerine won't, etc. And while I still would recommend disinfecting your coops, etc - you still will have marek's on the premises through feather dander, etc> Still it helps reduce the amount of infectiveness of your area.
The best thing you can do is vaccinate all new babies, follow a protocol of keeping birds under four months old away from those over four months old - not on the same ground - until they're at least four months old. Birds need time to develop their immune systems, time without excessive challenges. Vaccinating at day one and boostering if recommended is the way to go. The only way a Marek's vaccine can do its job is if it's given time to 'take hold' without challenge. Since you have had an active case, just make sure and keep the babies apart from your adults from now on - and buy vaccinated.
It's really more easy to vaccinate for Marek's than it is to give a simple antibiotic shot.
Also look for clues to active mareks in your flock: ocular forms including greyed over irises and pupils that either become non-reactive (use a flashlight to test them just like a paramedic does) or that change shape or freeze dilated or contracted. Keep birds' immune systems healthy. Give them lots of sunshine and fresh air, appropriate feed that is completely fortified and age-appropriate, etc.
Here's an article I continue to find immensely helpful. I hope you'll find it to be so, too.
http://www.firststatevetsupply.com/poultry-health/mareks-disease.html
And this one:
http://www.shagbarkbantams.com/page9.htm
And another on vaccinating:
http://poultryone.com/articles/mareks.html
On a more personal note, I had a case of ocular Marek's in my flock and had for about 10 years in one bird, a rooster. A few of my birds were vaccinated stock, others were home-hatched. In all my years with the flock and the active case (which I didn't understand at the time was Marek's as I didn't know there was an ocular form and the bird was never one day ill or injured) I never had a case of paralysis. The birds were not all vaccinated. I did however keep them apart until their immune systems were mature. I really feel that had a lot to do with my "luck", of course "luck" taking up the other part of it.
Because that bird died (of old age) this year, his dander can still be here - and the one hen that survived him could still carry it possibly. I will from this point always have vaccinated stock.
It doesn't stop Marek's. But it does help reduce the cases of the problematic Marek's, the ones where there is paralysis and tumors, neoplasias, etc. It's the best we have and a darn good tool.
I've learned not to worry too much about Marek's. It's energy not worth spending on that when instead you can be proactive and work on your flock. It's a hard skill to learn, and I hope that you'll be able to find your own peace with what has happened in your flock. I hope my post might help that. /hugs