Sounds logical to me!The biggest question was simply, should we keep these birds and try again next year? And I think the answer is yes, address the known issues, try again next year, and see how that goes before blaming the parent stock.
The quickest test may be for you to hatch some of her eggs.
Checking for fertility by looking at yolks when making breakfast might be a good first step. Would rule out her cockbird not getting the job done.