Instead of DE I use a product called "Sweet PDZ" (also known as "Stall Dry") to freshen up my duck pen. Cleaning duck pens is a big deal since my ducks live in the third bedroom of my town house. Keeping smells at bay is a daily ritual, but it's mostly upkeep, rather than shoveling. (also this is for adult ducks, but at 5 weeks, they are close)
Every 4 weeks or so, I completely change the bedding, (which is horse stall wood pellets, like Equine Pine). After I place a thin layer of wood pellets down, I use a big cup to sprinkle the PDZ over the pellets. If I am running low on pellets, I will spritz the pellets with water, which makes them expand a little, before i put on the PDZ.
Everyday I check the room when I go to visit them and play with them. I have a fan in there to keep the air moving. I set up a cheap air purifier (one that uses a charcoal filter) which helps suck up smells. I check the pen over and replace area's bedding where needed. They tend to hang out in certain spots, so I scoop those areas out more often. If the bedding looks okay, I'll just sprinkle some more PDZ, and/or put down more pellets. Sometimes it helps to fluff up the bedding too. If I see any big poops or a collection of poop, I scoop it out (kind of like cat litter). If I can't get to the poopy area without getting completely covered or without having to shovel everything out, I sprinkle more PDZ to cover the poop. IF poop is dry, it doesn't smell. The PDZ comes in granules or powder, I use the granules (not as much dust, but it's still very dusty). By spot cleaning, I save on bedding and time cleaning. I typically do this when the ducks are not in their pen (like when they go outside or to the tub) since it is dusty, and my mini shovel tends to freak them out royally.
I'll also buy baking soda, the kind meant for the freezer or fridge, open up the sides like you are supposed to on the package, and place them around the room where the ducks can't get to them. The baking soda helps suck up bas smells as well. I out out 2-3 new ones each month, and every 2-3 months I throw away the oldest ones. I'll also use an odor killer air freshener called "Odor Killer" by "Renuizit." It doesn't have a smell, but seems to keep the air fresher.
I plan on writing this down and maybe even documenting it with photos for my website, once out new pen is done.... We're waiting for a reply from yet another contractor as to whether or not he will build our new duck pen. Right now they are living in a series of smaller pens I have connected together (using my McGyver skills, lol)... Their new pen will be much easier to clean/keep clean. I can't wait for that... I even designed a "chimney" that pipes the fresh air coming in from the vents directly in the pen.
Oh wanted to add- My ducks get food and water all the time... I keep their food and water on a metal mesh floor, with pans underneath to catch drippings. I put bedding and PDZ into the pans to help absorb whatever falls in there. I clean the pans out (by dumping into the garbage, and wiping down with peroxide or bleach water) once a week. This helps cut down mess and smells GREATLY. If you can work a metal mesh into your design (even if just for the food and water) so you can put pans underneath, it's worth it! My food and water area are on a second "floor" so I can access the pans easier. The ducks walk up a ramp to get to the food.