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Don't be sorry about being new to this. We were all new once anyway!
I've raised a flock of silkies + non-silkies for years (I just can't resist a silkie or two
). Most silkies just don't roost, and they prefer to huddle somewhere (usually the nest box) for the night. You see this behavior with new & introduced birds of other breeds, too - especially when they are younger. Many of my silkies slept in one nest box (for awhile, 4 of them crammed in there) for years. No one ever laid in there, but it was the silkies' favorite place to sleep. As long as they come out and eat and drink, it's totally fine for them to sleep there - a little more of a complication if you only have one nest box & it is full of silkies!
In my experience, after awhile, the docile standard breeds I raised (Delawares, Welsummers, EE's, BR's) just came to not "see" the silkies anymore, unless a silkie tried to sneak in and steal a tidbit from a dominant hen (in which case there'd be a peck) or something like that. There are sometimes incidents of picking on new silkies but they don't usually last b/c silkies are so submissive. My silkies (I have 3 in a flock of 14 birds) tend to run in their own crowd, and will mix in with the others or explore the fringes - but either way, the big birds just pay them no attention. I think if you just give your guys some time, they'll adjust & set about doing their silkie thing.