When you look at shank color, remember you are seeing feathers/follicles, scales, upper or sub dermal. Pink foot pad = white skin. Java should have yellow skin which is why the yellow foot pad is required.
Skin color has their own genes W is dominant white and inhibits yellow carotinoid deposition in skin. ww will have yellow skin.
Shank color is the result of a combination of up to 5 genes.
If a chicken has white feathers, rather than black, then the shank will look lighter.
White Java have Willow shanks most with with BRIGHT yellow foot pads. Some have a "swarthy" looking shanks...appearing more yellow with willow tones still present on the scales.
It has also been said that there are other undocumented genes affecting shank color. When I bred Blacks and Whites together as test matings, I found the black offspring had PERFECT shank/foot/eye color but the sheen (of the blacks) was dull...this is easily corrected by crossing back to blacks. I have hatched hundreds of chicks from both Urch & Garfield. Garfield has the best shank/foot/eye color with much higher ratios of correctness (color-wise). There are other lines out there as well each with it's own challenges.
For the Black Java and it's unique shank/foot/skin color I propose some of the combinations of genes related to eye color are directly related to skin color. You will find that the more yellow shanked birds will have the lighter eye color and the white skinned birds have dark eyes.
Here's some additional info:
The shank/feet color is controlled by genes that affect the skin at different depths. The visible color is due to the combined effect of the different colors of the dermis and the epidermis. So, the shank/feet colors are a combination of upper skin and deeper skin pigmentations. The following table gives the shank/feet colors that result from the major gene combinations (the bird has two copies of each gene). It is important to remember that other genes can modify shank and foot color. For example, the sex-linked barring gene, B, is a potent inhibitor of dermal melanin. The Barred Plymouth Rocks, for example, would
not have light shanks and feet if it were not for the fact that they have sex-linked barring. The female Barred Rocks tend to have darker shanks due to the dose effect of the barring gene. The following table is intended as a guide but should not be considered to be absolute, since (as mentioned) other genes, such as sex-linked barring, can modify shank/foot color.
Some Basic Shank/Feet Color Genetics
Shank/Foot Color Genes
Near black with white soles W+, Id, E
White shanks and feet W+, Id, e+
Black shanks, white soles W+, id+, E
Blue shanks, white soles W+, id+, e+
Near black with yellow soles w, Id, E
Yellow shanks and feet w, Id, e+
Black shanks with yellow soles w, id+, E
Green shanks with yellow soles w, id+, e+