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Yeah, good question. The standard answer is leghorns can and usually have the pigment repressor. Either it could be recessive or the leghorn lines bred for sex link crosses don't have it with the express purpose for brown/tan eggers in the crosses. If it's recessive then the crosses will produce the tan and brown eggs, however the crosses and mixes bred together will produce the 'pale eggs'.
As for the blue gene & pea comb, you probably meant the fact these genes are located very close to each other on the same chromosome.
When the chromosomes split up during cell division, the chromosome splits up in sections, so if two genes are located close to each other they are very likely to be on the same section most of the time. It's for this reason the majority of blue/green eggers also have pea combs.. and why single combed blue/green eggers are rare(they exist, just uncommon- like some of my own birds).
What this also means, if one outcrosses the typical blue/green egger with a pea comb to anything single combed.. over 90% of the time, it will be the pea combed ones that lay blue/green eggs.