There should not have been any fluid in the sac around the heart. If there was fluid in that sac then this an abnormal finding. The posture you found the bird in when she died is indicative of a phenomena called "flipover" in chickens. It is when chickens are just walking along, stop suddenly, flip over and die. It is basically a massive chicken heart attack. This may have been the COD on this bird.
The neck being very pliable after 24 hours is...questionable. I was under the impression that rigor mortis lasted up to 48 hours in chickens, but I am not positive of that fact. I also don't know how much loosening you should expect after 24 hours. You may want to look into this further.
The bacteria in the crop would still be active, but I wouldn't think you would expect the contents of the crop to "reek" as you indicated. I mean it's not going to smell like roses, but it shouldn't be overwhelmingly foul either.
I see no lesions that would indicate a disease, and the bird had no clinical signs or symptoms. The only abnormality that was obvious was the kidney condition.