With something as rapidly producing as chickens, yes you want the most resilient birds to reproduce. But then the caveat of "purpose" in modern times comes into play. If you're breeding for specific breed traits, then it doesn't matter how robust that extra bym rooster may be, you can't use him. I think it all comes down to intent. If your intentions are to make money or keep pets, then you do the best you can with what you've got, and make breeding and vaccination decisions accordingly.
You will likely not end up with birds that are as resilient as landrace breeds developed solely through natural selection, but that's the price you pay for throwing human intent into the mix.
You will likely not end up with birds that are as resilient as landrace breeds developed solely through natural selection, but that's the price you pay for throwing human intent into the mix.