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Totally depends on what you want from the birds you raise. While hatchery birds might not match the standard of perfection, they can be better egg layers than birds that were bred for show. We have almost all hatchery birds, with a few breeder Ameraucanas (since we wanted to know that they were homozygous for the blue egg gene).
The one thing you might have to watch for is that I think hatchery birds are less likely to go broody. Out of 25 two year old birds, we have had two go broody, a blue laced red Wyandotte and a barred Rock. The BLR was given 11 eggs, hatched 7 and is a good mom. She's got a job for life! The BR is broody now and I think I'll give her a few eggs tonight.
So, basically, if you want good, standard, heritage birds to sell as purebred birds/show prospects, you can't use hatchery birds. If you want to become self sufficient and don't really care if the birds meet the standard of perfection or are mutts, go ahead and breed your hatchery birds.
I would recommend paying attention to what eggs you allow to hatch, and only breed the best to the best instead of letting them hatch indiscriminately. That way your flock will improve each year.