Dragons, I respectfully disagree, your hatch rate is less than 68%. The reason the egg doesn't hatch has nothing to do with the hatch rate. If you set the egg in the incubator, it must be included in the calculations. Unless there is a special new math used for determining hatch rates that I am unaware of.
The hatching process begins when the hen lays the egg.
Here's the bigger question: why do you think only 11 of the 16 hatched? We know why the clears didn't hatch. Why did the other 5 die in the shell?
I am experiencing the same issue with my hatches. About 50% don't hatch, and of that 50%, half are clears and the other half failed at some point in the incubation process, most at the end, when the chick is fully developed but dead in the shell.
I am not happy with a 50% hatch rate. But if I throw out the clears that would increase my hatch rate to 75%. Big difference in the hatch rate but I still have to consider the eggs that didn't hatch regardless of the reason.
I think I have a problem somewhere and I am just just trying to figure out where it is.

Here's the bigger question: why do you think only 11 of the 16 hatched? We know why the clears didn't hatch. Why did the other 5 die in the shell?
I am experiencing the same issue with my hatches. About 50% don't hatch, and of that 50%, half are clears and the other half failed at some point in the incubation process, most at the end, when the chick is fully developed but dead in the shell.
I am not happy with a 50% hatch rate. But if I throw out the clears that would increase my hatch rate to 75%. Big difference in the hatch rate but I still have to consider the eggs that didn't hatch regardless of the reason.
I think I have a problem somewhere and I am just just trying to figure out where it is.