Okay, after some serious thinking, I've changed my mind.
An air-tight, sealed, and completely rigid container would prevent pressure changes.
An air-tight non-rigid container would NOT protect from pressure changes.
Pressure changes are only part of the problem with shipped eggs though. They are also subjected to various temperatures, and vibrations.
It would be interesting to put them in an air tight thermos and ship them to see what happens. Ideally it seems, they 'd be shipped with the eggs kept vertical (big ends up), to prevent all the trauma to the air cells.
We should do an experiment!
Ship eggs vertically in a thermos, with signs that say "This way up" to try and keep them properly oriented as much as possible. Then at the same time, ship a control group would be sent the usual way (bubble wrapped on their sides). Both sets would need to be hatched in the same incubator at the same time, to control for incubation variation.
I'll volunteer to be the hatcher/reciever...