Disease resistance in birds is an interesting subject to me. Among my fruit trees, garden, and landscaping I do not want anything that I have to baby day in and day out. If I give them good growing conditions and they fail to thrive then they are replaced. I think that is common sense. I have found that particular blueberry varieties are better suited for my conditions. Where I live grapes can be a challenge, but muscadines are near bullet proof once thet are established. My wife likes Hydrangeas as do I, but when the summer heat sets in they really suffer. You better have them in the shade, but they don't bloom as well in that shade. My point is that particular varieties are better suited for local conditions. Local conditions vary. That can even vary even with ten miles of difference. Ten miles from here they have clay soil, and I have sand six and seven feet before you get to a base.
Birds are a little different. It is obvious that you want birds that are resistant to the problems that you might have naturally in your area. You can select by culling. What you can't select for is what a bird has never been exposed to. If you are consistantly bringing in new birds from different sources, you will eventually bring something in that your birds have not been exposed to. They may get sick. If you have a problem in your flock, and you bring in birds that have not been exposed to it, they may get sick. I will use MG for an example since it is so common. If you start with a flock that has a degree of resistance to it, and are carrying it then new birds that have never been exposed might not have that same resistance. They may catch it. It works both ways. The same as if the wild birds are spreading it your area. They might not be where a bird is from.
I am not trying to discredit the fitness of some breeds or strains. I am interested in breeds, that have strong immune systems. Chris pointed out the reputation that games have for disease resistance. Fayoumis are reported to be resistant to alot of poultry diseases. The commercial industry is breeding for disease resistance.
As far as breeding for disease resistance in my flock, I can only select for vigor until a problem shows up. A goal is not to bring it here though. In the old days flocks were more isolated. We move them around alot more now. Especially with this new interest in them. You can start with a breed that has a reputation for disease resistance and select for resistance to localized problems, but I have a hard time seeing improving further unless I introduce them to more problems (which I don't want to do).