ok gjoyner...let me try to answer your question since I'm sure that is what you are really interested in
First of all, I am a somewhat of a newbie too, and am just finishing up my coop, but I have had my chicks for 2 months now and have been doing deep litter in my brooder with no problems and am planning the same thing in my coop.
I have a raised coop with a particle board wood floor and have sticky vinyl squares on it to keep the wood a bit more protected and easier to clean when I DO clean it out.
I prefer wood pellets over shavings only because I've had less dust/smell with them than the shavings, but as a warnign they are more expensive. I think I pay 6.95 for a 40lb bag and I will probably use two bags in my 5x6' coop...tho I have a few shavings left over from when I did use them and will probably mix them in to make my pellets last a little longer. Anyway...
I am going to put a sprinkling down of daitomaceaous earth-food grade...you will most likely have to order it off line unless you can find stallDri somewhere but I didn't have any luck so I ordered 4- 5lb tubs of it with shipping I think it was around $30. (as an fyi I also mix that in their feed to help with worming) but I will sprinkle that down for mite and flea control. Then I will sprinkle a layer of shavings, like you would in your brooder.
Then I will put another layer od DE, and top it off with my pellets which will break down to dust when wet and will hopefully help compost the shavings a bit. Then as it's needed if things get stinky or dirty looking I will add another layer of DE and pellets and or shavings as I see fit and mix it around. I plan to clean my coop out 3-4 times a year.
For under my roosts, I have a poop board that is the same particle board with vinyl topped and I put shavings and de on that about a1/2 inch thick. My roosts and poop board are removable and I will probably take that out weekly and dump it. And that's it!
That's all you should have to do...of course you don't HAVE to do all of that...simply put for deep litter you just have to put down a layer, stir and add occaisionally as needed, and clean out very periodically. Good luck!