Ah ha, I begin to see the concern . . .
First eggs do tend to be smaller, but there is quite a range of small. Most of the first eggs from my eleven were small to medium chicken egg size, and now they are more large to jumbo size. Twice we have had "pullet eggs."
One of the conundrums of having a drake and a laying duck are that she needs loads of extra calcium, but that much calcium for him or for younger, non-laying ducks, is not so healthy. As things are, however, you will hear a number of people poo-poo that concern, saying they have always fed all their birds layer ration all their lives with no problems
I go with my instincts on a number of these kinds of things. My runners' sizes vary a bit, so I reckoned they would eat what they needed of the oyster shell and other items I offer - kind of a cafeteria style feed program. If the drake has access to other sources of food, like vegetation, insects, maybe even some rolled oats, that would effectively reduce the calcium proportion of his diet, which would be easier on his internal organs.
Oh, and the eggs could very well be fertile. I have an all-girl flock right now, so I am not so well versed with details about fertility (such as, is a drake as potent right after he reaches sexual maturity as he ever will be, or does he become moreso as he gets older).