Turns out it was a pretty bad malformation. The upper beak looked like two big buck teeth. Even the sinus didn't seem to be fully closed off. Poor thing was in such a state. It was barely alive and just gasping. I went with my gut, having been around livestock since I was young and now farming myself. Sometimes you see something and alarm bells just go off even though you don't know why yet.
I left it to see if it would gain strength to progress but I think the pip it had made had hit a blood vessel. There was blood and it just seemed like it was suffering.
Definitely keeping that noted if it pops up in the future. Genetic or did that egg happen to be in a cool spot and it was a fluke thing.
Can't win em all. The chicks in the brooder are doing good.