I am not sure how common coloboma is in chickens, but it does strike me as strange that you are experiencing it in so many (?) of your birds. Are the ones that have it related? If so then it might well be genetic. If they are unrelated, is there the possibility that you have a strain of Marek's that presents most frequently as ocular Marek's? Have you had any other signs of illness or deaths in your flock over the last three years that align with Marek's symptoms?
Grey eyes or blindness in the eye can be a sign of Ocular Marek's, but itsn't necessarily always present. My Faverolles hen started presenting ocular Marek's at 4.5 years old and she never developed the grey eye, just the "keyhole" or drippng shape to her pupil.
It's a bit hard to tell from your photos but sometimes chickens do have mottled looking irises, as well. Is the pupil shape actually changing, or is it just dark pigmentation on the iris? It may require someone to help you hold the bird and a strong light to look into their eyes to see if you can tell. Coloboma is a malformation.