Then she is not broody. They're not developing if she's not on them day and night. I would remove eggs before they rot and start to stink. Rooster or not, just get rid of them. Remove them during the day when she's not on them and she won't make noises at you. For some reason she is choosing to sleep in the nest box. My guess is there isn't enough room on the roost.She
She never sits on them at day only night