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I would go with the oral application for 3 days, and follow up with probiotics, because it is a timed-release antibiotic/bacteriostat. That will be a good, swift, aggressive kick to the infection that will continue for a week. Give dense probiotics, like Activia, or Blue Mountain yogurt. You can also use baby parrot formula 1/2 & 1/2 with his usual food, which he'll eat ravenously because it tastes great. It's 19% protein, probiotics and extra nutrition for overall great health.
If giving it to him is a pain, you can inject it into grape halves- that has always worked for me with Tylan, which is absolutely bitter and abominable.
And your vet will charge a lot for the Baytril in addition to the visit...you may want the Baytril on hand in the future...