The chickens that are vaccinated for Marek's are vaccinated with Turkey Marek's. They cannot shed that virus. Something like when I was vaccinated with cowpox to prevent me from getting smallpox.
My suspicion, and I certainly don't know, is that they vaccinate the chicks after they are sorted and in the box for shipment, assembly line fashion. To only vaccinate part of a shipment would disrupt their shipping process. I can imagine a conveyor belt system where someone sorting the boxes looks at the shipping documents and puts the box on one conveyor line for vaccinated and on a different conveyor line for not vaccinated. It could be something else entirely.
Chickens that have been vaccinated with the Turkey Marek's can still get chicken Marek's and can shed that virus, but vaccinating them with Turkey Marek's does not assure that they will get chicken Marek's. You don't know if they have it and are shedding the virus or not.