How old are these birds, in months?
How many females?
How big are coop and run, in meters by meters?
Dimensions and pics might help here.
As long as there's no bloodshed and everyone's is getting enough to eat and drink and rest, let them work it out.
The more space, the better. Birds will peck to establish dominance, the pecked bird needs space to get away. As long as there's no copious blood drawn and/or new bird is not trapped/pinned down and beaten unmercilessly, let them work it out. Every time you interfere or remove new birds, they'll have to start the pecking order thing all over again.
Multiple feed/water stations. Dominance issues are most often carried out over sustenance, more stations lessens the frequency of that issue.
Places for the new birds to hide 'out of line of sight'(but not a dead end trap) and/or up and away from any bully birds. Roosts, pallets or boards leaned up against walls or up on concrete blocks, old chairs tables, branches, logs, stumps out in the run can
really help. Lots of diversion and places to 'hide' instead of bare wide open run.
Good ideas for hiding places:
https://www.backyardchickens.com/threads/a-cluttered-run.1323792/