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Same here. Different coops within the same fenced area. Also only have females of both. I kept the ducks completely separated from the chickens until they were trained to go into their own coop at night, then I let them see the chickens on the other side of the fence for a few days, then I connected the chickens' and ducks' day pens together and now they get along fine.I have separate nighttime coops for my chickens and my ducks, but they share a 3000 sq foot play yard during the daytime.
all my ducks are females all my chickens also females