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For my brooders now, I construct with 1/2" wire bottoms (with a removable catch pan underneath if kept on the porch or such in warm months). I was doing the bath towel thing, but found an easier / disposable way. Layer the wire with paper towel, then wax paper, then paper towel, wax paper, paper towel.....etc.... (depends on how long you want to keep them on the paper towel, and how nasty you can stand their floor before they graduate to the wire.) Kinda like the windshield-peel on the NASCAR cars......peel away to a new fresh layer. They feed off of "floor food" that's scattered on the paper towel the first couple of days. By then, they'll have gotten used to the little jar feeder. And yes, the small quart jar chick waterer like JJ mentioned......no marbles needed.
Just curious, why do you want to seperate the males and females? Well they be in colony pens?