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Well, one could argue that the use of "pecking" to discourage a bad behaviour is use of negative reinforcement, and if that's the case I would claim to use a balance of both positive and negative reinforcement. I find it important to discourage bad behaviour just as much as I encourage good behaviour. I guess that depends on your definition of "negative reinforcement", though!
As for defecation in the lap... yes and no. I always, always use a towel just in case, but I'm also little by little working on house training my chickens. Compared to when they were chicks and much younger, I have had VERY FEW accidents these days! Chickens are very much creatures of habit, so to house train them, you simply work off of that. Whenever my chickens poop I say, "Go pooters!" I chose "pooters" instead of "poop" or any variation thereof because perhaps the most common question I get asked other than, "Is that really a chicken?" ( as I take my chickens with me into the city quite often ) is probably "What do you do when they poop?" and any other variation of "poop" out there. I contemplated using the command word "Defecate!", but "Go pooters" just comes out much more readily.
While outside, I cart my chickens around in a satchel ( one at a time, not the whole flock in one bag! ), and chickens associate this satchel with a nest area, and even boys have an instinct NOT to "go" in the nest. It's ingrained in them since chickhood. I used to take my chicks around with me bundled in my scarf ( and it was a WONDERFUL scarf - super soft and warm with all those baby chicks and their soft chick plumage all cuddled up right against my neck with a big, thick, warm scarf holding them in ), and about every hour or so I would drop them in some grass. THOSE were big poops! Since I was using a heat lamp method at this time instead of my current heat pad method, they were up all night long, and if I didn't give them a definitive time to sleep, they became very, VERY cranky and would become VERY loud, AND they were living in my room, so when they were cranky at night, guess who wasn't getting any sleep! While awake all night, and sleeping in my scarf all day, I totally alleviated their discourse with a lack of "night time", and learned that even chicks can hold their bowels very well when in a "nest" - this is to keep the nest as clean as possible while raising the babies, because no babies raised on a pile of poo are ever very healthy, and we all know the animal kingdom is all about being as healthy as possible. However, knowing this, we know that chickens DO, in fact, have bowel control, and knowing that chickens have bowel control means that house training is entirely possible!
So my chickens are integrated with the command phrase "Go pooters". As they begin to recognise this phrase as something associated with something they do, when I say it out of context, they begin to experiment to see just what it is that it means. When I let my chickens outside and I say to them, "Go pooters!' when they haven't defecated, they perk up and look at me. Then they turn around, and look at me. Squat, and... look at me. They continue to check in to see just what it means. Then they poop, and I explode with, "Good go pooters! Good, good go pooters!" and commence to give them scratches on their breast and head, comb and wattles, and anywhere the individual chicken seems to enjoy. As time progresses, it gets to the point that I can have my eldest in someone else's house with me for several hours, then take him outside or perch him on the bathroom sink or toilet, tell him "Go pooters", and he squats and goes.
Expanding on this command phrase, let's grab a littler box ( NO litter as the chickens will try to eat it ), a metal pie pan, news paper, trash bin, toilet, or whatever else you want to use as a "designated" area. Wait until you think your chicken is ready to go ( this can sometimes be done by timing them between poops to see how long on average they wait between going ), pick them up, put them in the designated area, and give them their command phrase. If they poop, praise them. If they don't, just wait until they do. Maybe let them go awhile longer. NEVER discipline them for going in the wrong place, though! Not until they have a FIRM gasp of where it's okay to go, and even then discipline sparingly. I use each and every poop as an opportunity to reinforce their command phrase. I may eventually expand it to include "NO pooters!" if they go somewhere they really, really shouldn't, but I will definitely hesitate on that.
Looking at what we've discussed above, that chickens have an instinct not to go in the nest, thus granting them bowel control; that chickens are dire creatures of habit; that chickens are very smart and inquisitive animals ( smart enough to EXPERIMENT with behaviour ), and thus trainable... we will conclude that it is entirely possible to house train your chicken.
On an unrelated note, though, I would VERY much disadvise thinking of chickens as just about any other "bird". Things in the pheasant family tend to act and think in a very different way than, let's say... the corvid family or the parrot and cockatoo families. Their diet, usual predators, physical capabilities, and environments tend to be quite different from other birds, thus they must think differently from other birds. What works with a parrot might not ( and probably will not ) work with a chicken. I know I say that I treat chickens very much like dogs, but that is while recognising that chickens have their very own psychology and behaviourism as well. Chickens are very unique from other birds in many ways, which is why it is important not to lump them with "birds" when talking about behaviour, psychology, and especially techniques used in training and interacting with them. I've had a few people now try to hire me to work with their parrots because they think what I have to say about chickens is so good, but I have to tell people all the time that I will NOT work with parrots, cockatiels, or any other domesticated bird. I will work with chickens only, and maybe I'll work with your turkeys, but I will not work with your peafowl or your guinea fowl, because I do not understand them since they are so different from chickens. Feel free to experiment on your own time with bridging the gap between different species language, but I'm certainly not going to try it, and certainly not with someone else's animals.