Thank you for all of the feedback and the links! (I will be reading the links later.)
1. There were no apparent cracks in the bad eggs.
2. There was no bad odor at the time the eggs were collected and stored.
3. They were stored together, in reused egg CLEAN cartons.
4. There are 29 hens (& 3 roo's) in this flock. Separating them out now would be a bit challenging. I would have to put some major projects on the back burner to do so. (I still have two animal houses to finish winterizing. I have a turkey house that needs to retrofit to move a new flock into. Etc.) And some of the training (like for the dogs) in progress would have to be stopped until the egg thing is figured out. AND I would need to create a separate pasture for them, as well as set up new housing/nests. All doable but it would take time and resources from the current projects.
5. I had planned to do my wonderful zip tie sit out starting next week or two. I sit in the coop/animal house during egg laying time and put a zip tie on the legs of girls laying eggs. One per day. At the end of the week, I can see who has laid and how many eggs were laid. I usually do two weeks of this - some girls take a bit longer to lay after a molt. The girls not laying at all are culled or moved to a new flock to help train newbies. I can modify how I do this and put a number on the zip tie (like #1 for one girl, #5 for another girl) and put the same number on the egg. That would allow me to associate bad eggs with a chick
6. Ugh. More work!

And a great learning experience.
7. I may need more coffee and/or sleep.
8. I am not renumbering my post, so this goes at the end. None of the eggs had poop on them. I collect the eggs and they immediately go into an egg carton for the day. I will start adding a date collected piece of paper to each carton. When I sell/give eggs, I always give the freshest eggs. No complaints.
9. I go through eggs pretty quickly. I had the extra eggs because someone had asked for a bunch of eggs, so I had reduced my daily usage to make sure there would be enough eggs. Always gave the freshest eggs and kept the oldest for me.
10. I noticed that the eggs had spots on them -- that appeared AFTER they sat in the egg carton. Very faint, faint circles.
11. I noticed that a few of the eggs (but not all of them) actually seeped gunk from inside to the outside. They had kinda gunk on the shell that wasn't there when I put them in the egg carton. The egg cartons sit on my kitchen counter and don't get moved or bumped into. They are not in direct sunlight. Temp is pretty constant.