Ill give you a link and cut and paste a section out of it. There are several possible causes if it is both in the incubator and under the broody. You might see something here that you think would be the cause. If it is both under a broody and in the incubator, that leaves some things out.
http://edis.ifas.ufl.edu/aa204
1.Sign: Not pipped. Full-term embryo, large yolk sac; yolk sac may not be fully enclosed by abdominal wall, may have residual albumen. Causes:
2.
a.Inadequate turning, resulting in decreased embryonic membrane development and nutrient absorption.
b.Humidity too high during incubation or after transfer.
c.Incubator temperature too low.
d.Hatcher temperature too high.
e.Eggs chilled (e.g., at transfer).
f.Nutritional deficiencies.
g.Heredity.
h.Embryological development accident.
i.Breeder diseases.
j.Inadequate ventilation.
k.Prolonged egg storage.
3.Sign: Pipped. Full-term embryo, dead in shell. Causes:
4.
a.Low humidity or temperature for a prolonged period.
b.Low humidity during hatching.
c.High temperature during hatching.
d.Nutritional deficiencies.
e.Breeder diseases.
f.Poor ventilation.
g.Inadequate turning during first 12 days.
h.Injury during transfer.
i.Prolonged egg storage.
5.Sign: Shell partially pipped, embryo alive or dead. Causes:
6.
a.See 8.a-i.
b.Excessive fumigation during hatching.
c.Eggs set small end up.