Get the pellets!!!! Especially since it's on the ground and muddy. I don't know where you are or where you get your supplies from (Tractor Supply, feed store, etc.), but they'll carry it. Horse pellet bedding is compressed pine and pretty awesome for those of us drowning right now. If you can, run an extension cord out there and run a fan to dry it out if you can. Hurricane season promises to be worse than last year....dear God.I also live in central Florida, and by ground I mean it was grass and now it isn't. Its currently very wet post-grass ground.
Planning ahead then, configure a way to drain water away from the base of your coop. If it's low, and water runs toward it, dig small ditches running away from the base, like spokes of a wheel, or dig out around it like a moat - or both! Several feet away, not right up next to it. The water has to have a better place to go than into your coop. The idea is to artificially elevate the base of the coop. If water is splashing up on and into the coop when the rain hits the ground, put straw around it.
If you've got screen/windows for ventilation, I bought thick clear plastic sheeting from Hobby Lobby and cut covers to put up over mine. I was out there a lot last season in a full blown storm putting them up. It helps a lot with the sideways rain. That's what got me last year. When Irma came I covered the entire coop with a tarp and held it down with 5 gallon paint cans. Desperation and all that.
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