Threonine is the key amino acid involved in membrane formation - make for firmer, more resilient eggs (not shells - that's primarily Calcium, though Phosphorus has a role in how effectively chickens use Calcium). Unfortunately, Threonine isn't required to be disclosed on feed labels. Apart from animal proteins, the best sources for threonine are going to be another animal protein (cottage cheese), soy, lentils.
I'm not sure if you are the poster feeding Organic, but lots of organic feeds are soy free, which can make it very difficult to get a good nutritional profile w/o using a lot of animal proteins and making the feed even more expensive. and because it doesn't appear on the label, you don't know what you aren't getting.