Missy, to my great surprise, I don't get a lot of flies with the deep litter. I think it's because I dig it over every day, so poop is quite quickly dug in and starts to be eaten and broken down by good bacteria, before flies can really get a hold. It really doesn't smell at all (which I still find amazing!!!). Having said that, it was a little whiffy in the first few weeks until the bacteria got going and got stuck into the poo. You need to let a little ecoystem develop.
Sounds like it is working great for you too!! I am really sold on deep litter for ducks now (as long as you can dig it over daily).
I agree with the idea of putting the bigger rocks at the bottom, then smaller ones towards the top.Bif, smooth river rocks on the top (eg. round their water supply) would be good too though.
I only have a little sand over my wire mesh, and then pine shavings over that. I scoop out the poop every day, and stir up the shavings that might be a little damp around the water bowl. I do this after letting the ducks out for the day so everything is dry for them that evening. I have a covered coop attached to the pen with straw in it, but they never go in there. It is not deep neither of my bedding is deep at all. I have actually had this bedding in for awhile though. When I had straw in the pen I had to clean it out every few days because it would stink. I do top off the pine shavings from time to time.
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