You know...I'm wondering about something...
As a bread baker I know a person can make a sourdough starter just from collecting yeast and natural bacteria in the air and not use and "starter" culture. It takes a little longer, but is the traditional way to do it.
Starters in different places taste different because of the regional differences in the air, like San Francisco sourdough.
So what does this have to do with embryos.. well, in the one video I watched on this the egg was surrounded by a clear membrane (saran wrap??) all the way around and through the process. Thus replacing the barrier of the egg shell, which we know is part of what keeps the bad bacteria out.
I'm wondering if the open places on the shells are inherently prone to picking up natural bacteria in the air?? No matter how clean the environment, natural bacteria is all around us.