Update:
All the birds are still head-shaking, some noticeably more than others. What's new is that last week I hatched out about 30 chicks, and within 12-24 hours, I noticed head-shaking. I cannot think of any disease that can spread so fast, and I was also very careful not to touch these chicks after handling my older birds.
I also went around to several feedstores and observed their chicks. Same thing, head-shaking/twitching. Perhaps the feed?
I did notice that there seems to be more
head-scratching in my flock (observed this in some older feed store chicks as well). This makes me think that there is something in their ears, but I don't see anything and I don't think it's plausible for it to affect newly hatched chicks as well, including those not in my flock.
The birds appear to be acting normal otherwise, and I am not seeing a drop in production or activity. Necropsy reports have not returned anything explicit, and the pathologist in charge of my case has about as much an idea of what's going on right now as I do.
In the meantime, I think I am going to stop worrying about it. I will still keep an eye on it, but I am going to proceed with my plans to cull (as I was on hold with regards to seling for a while wondering if this was contagious). I am also going to proceed with adding new birds (from hatching eggs) to my flock.
Here is a video I made yesterday of my flock, the youngest chicks in the brooder are not shown.
I will udpate if anything changes.