all 13 were in the coup laying down together
13 total birds in both age groups?
Hoe big is your coop and run, in feet by feet?
Dimensions and pics would be good to know and see.
Probably good you walked away, it's hard to watch without intervening.
Sounds like you have a good setup.
Integrating 2 sets of chicks can be harder than integrating chicks with adults.
The 12wo cockerel may soon be seeking dominance and sex, none of the pullets are ready for that, that can be uglier than the pecking order battles at integration.
Might want to have a crate
ready to seclude him if it's get bloody.
FYI.....semantics, maybe, but can be important communication terms when discussing chicken behavior.
Female chickens are called pullets until one year of age, then they are called hens.
Male chickens are called cockerels until one year of age, then they are called cocks(or cockbirds or roosters).
Age in weeks or months is always a good thing to note.
Might help:
Integration Basics:
It's all about territory and resources(space/food/water).
Existing birds will almost always attack new ones to defend their resources.
Understanding chicken behaviors is essential to integrating new birds into your flock.
Confine new birds within sight but physically segregated from older/existing birds for several weeks, so they can see and get used to each other but not physically interact.
In adjacent runs, spread scratch grains along the dividing mesh, best if mesh is just big enough for birds to stick their head thru, so they get used to eating together.
The more space, the better. Birds will peck to establish dominance, the pecked bird needs space to get away. As long as there's no copious blood drawn and/or new bird is not trapped/pinned down and beaten unmercilessly, let them work it out. Every time you interfere or remove new birds, they'll have to start the pecking order thing all over again.
Multiple feed/water stations. Dominance issues are most often carried out over sustenance, more stations lessens the frequency of that issue.
Places for the new birds to hide 'out of line of sight'(but not a dead end trap) and/or up and away from any bully birds. Roosts, pallets or boards leaned up against walls or up on concrete blocks, old chairs tables, branches, logs, stumps out in the run can
really help. Lots of diversion and places to 'hide' instead of bare wide open run.