Check out this Hatchability Problem Analysis
http://edis.ifas.ufl.edu/aa204
Troubleshooting: Specific Problems
Sign: Not pipped. Full-term embryo, large yolk sac; yolk sac may not be fully enclosed by abdominal wall, may have residual albumen.
Causes:
Inadequate turning, resulting in decreased embryonic membrane development and nutrient absorption.
Humidity too high during incubation or after transfer.
Incubator temperature too low.
Hatcher temperature too high.
Eggs chilled (e.g., at transfer).
Nutritional deficiencies.
Heredity.
Embryological development accident.
Breeder diseases.
Inadequate ventilation.
Prolonged egg storage.
Sign: Pipped. Full-term embryo, dead in shell.
Causes:
Low humidity or temperature for a prolonged period.
Low humidity during hatching.
High temperature during hatching.
Nutritional deficiencies.
Breeder diseases.
Poor ventilation.
Inadequate turning during first 12 days.
Injury during transfer.
Prolonged egg storage.
Sign: Shell partially pipped, embryo alive or dead.
Causes:
See 8.a-i.
Excessive fumigation during hatching.
Eggs set small end up.
Sign: Chicks hatch early; tendency to be thin and noisy.
Causes:
Small eggs.
Differences among breeds.
Incubator temperature too high.
Incubator humidity too low.