Sounds like they are probably OK on your part. So do they still get access to the run while confined?
Must have been terrible to have a fire.
I wouldn't waste time vaccinating for cocci, it's in every single chicken poo and only an issue when allowed to grow out of control, usually in warm humid conditions like that of a brooder. If you happen to feed medicated feed it renders the vaccine useless. But just making sure your brooder is dry is good enough... unless it makes you feel better. If you have the choice for Marek's it might not be a bad idea.
If you need to you might get her a saddle apron. Or the bully some pinless peepers to take her down a notch.

If you saw it happen suddenly, than it probably isn't parasite. But you could ask the previous owner what they mean by "covered".
Yep, I've lost two chicks to predators already this season.

And considering the possibility of confinement.
If you do add treats, maybe make sure they are good protein ones since those are mostly dual purpose ladies. They will do best with about 18%. If you wan't to feed your whole flock the same, I like the purina flock raiser with 20% protein and oyster shell on the side for layers.
If she isn't red they shouldn't peck at her, Other than blu Kote... I don't know if you could use blue food die to cover up any injury or not.