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I do a head count every night of all animals (chickens, turkeys, ducks, geese, peas, goat, sheep, rabbits). When all of the animals go in to roost/sleep and I go out to close the chickens coops/houses/stalls/brooders, I count to make sure that everyone is there. When I get back from work, it's impossible to do a head count because everyone is free ranging, so I have to wait until they go in to roost. In addition to my head count, I shine the light on every single chicken and I visually check from beak to toe nail to make sure that there are no problems or injuries. I check beaks, eyes, combs, feathers, legs and feet. I have done this for years. By checking the feet every day, I was able to notice that 2 of my girls had bumblefoot a couple of months ago and I performed the surgery to correct the problem. With so many animals, I would have never noticed this if I hadn't done a visual.
And as you stated, the head count lets you know if something is taking your animals.