Thanks for every one's opinions.
I took the conditional use part to mean they could require me to have additional setbacks or buffers, etc. I'm going to call the township tomorrow and see where I get on the phone with them. They just made our neighbors up the road get rid of their two roosters after another neighbor complained, but I don't think they had the required property size based on what I can see when I drive by and how close they are to other houses. But we're pretty isolated at my end of the road and I definitely can put a coop within their requirements.
I don't want to cause trouble for my other neighbors that have animals, but the people across the road have too many horses for their property and no one says "boo" to them, so why give me a problem about 6-12 hens? I also am afraid to get the township mad at us since we have an addition under construction that still has to be inspected and approved when its done.
I'll let you all know what happens, but keep your fingers crossed I can get my chickens!