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Thank you so much I feel like there's a little bit of hope! Hopefully I can get their immune systems healthy enough to keep the diease dormant. Should I just get them their own pen and coop and just forget about putting them together? I have a feeling that the big birds have already been exposed to it since I had their grow out pen in their run but I'm not fully sure if that is how it works.That looks more like shed intestinal lining to me.... it is flesh coloured rather than blood red.
If it is Marek's disease, you have it for the long term..... essentially survivors must be assumed carriers for life and the virus can survive for months in the ground and buildings. It can also be carried on clothing,shoes and even the wind. It is spread via dander dust from infected birds which is inhaled to infect new birds. It is advisable to operate a closed flock as even healthy birds could carry the virus to a new home if you sell them. I breed from survivors in my flock and broody rear the chicks within the flock so that they are exposed to the virus from day one. After the iniial outbreak it has been my experience that the virus settles down and you just have the odd outbreak every now and then. I bred 56 chicks last year and only 3 of them developed symptoms of which I lost 2 (pullets of course) and the cockerel that was destined to be culled, made a miraculous recovery and was healthy for several months before a fox picked him off!..... not much meat on him though. Then I had a 2 year old hen go down with it over winter. She battled it valliantly for 4 months before it took her. I have had no more victims to it in the past 5 months but it will rear it's ugly head again sooner or later, but not nearly as bad as that initial outbreak.
I really do appreciate all of your help!