Hi everyone,
I know it's been a long time, but I've only just received the results from Ghent University. Unfortunately Phil was tested positive for visceral Marek's disease. I've made my peace with it and the vet's got my back for any future questions or doubts. As a last update I would like to make this sad discovery into something educational and give you as much info as I can about my case. I will add the original report and translate the necessary parts. You will notice English is not my mother tongue so if you have a remark about something that is generally said in another way, please let me know.
Around the beginning of November my 9-10 month old ayam cemani roo Black Philip started losing balance and looking overall depressed. A week later he stopped walking.
I suspected Marek's because: 
age, losing balance, doing split, bright green droppings
My normal vet and avian vet didn't suspect Marek's because Phil was still able to MOVE the legs AND he didn't deteriorate fast enough. He was also diagnosed with coccidiosis, which often goes hand in hand with Marek's. After coccidiosis treatment he was alert again, eating and drinking well.
After I had taken care of him for a few weeks he got up again. I can't describe how happy I was. After just a day of standing up again he was walking around. Unfortunately, after another week he passed unexpectedly. It was December 5th by then.
My sweet avian vet did the necropsy for free. Due to an enlarged liver, spleen and kidneys Marek's was back on the table. Parts of him were sent to the lab for testing. Now we get to the report.
(1) 
submitted material: kidney, liver, heart, Nervus ischiadicus (sciatic nerve)
(2) 
histological findings
Liver: architecture of liver is disrupted by a dense infiltration of T-cells(? probably), mainly in the 
(some part of the liver). They have a pyknotic (=dead) core and a limited amount of cytoplasm.
Kidney: the interstitium (=space between tissue) has expanded by a dense infiltration of T-cells.
Myocard (=muscle in the heart): normal
n. ischiadicus: not present (only small piece of tumoral kidney)
IHC: CD3: Positive --> 
This is Marek's, I will try to explain it in normal language:
ImmunoHistoChemistry: CD3. CD3 is a certain antigen connected to T-cells. T-cells are the guys that react to an infection, part of the immune response. During the test they use certain molecules that can connect to the CD3 and will turn a certain color if connected. If CD3 can be detected it means an infection was present. In the case of Marek's T-cells can become tumors as Marek's is, in fact, a cancer.
(3) morphological diagnosis
kidneys and liver: image of acute/visceral Marek's
		
		
	
	
There's just one thing I still don't understand... how did the vet mistake an ayam cemani for an australorp? 

 
It's been quite the emotional journey, but I've learned a lot from it. Thank you all once more for the help and support, it's really reassuring knowing there are always people on this forum ready to help.